Thymine rather than uracil is used in DNA due to specific evolutionary selection pressures
Thymine is used in DNA rather than uracil because spontaneous cytosine deamination continually generates uracil in genetic material, creating a mutagenic threat that evolutionary selection pressures resolved by employing thymine for stable information storage.
The retrieved papers consistently support the evolutionary and biochemical rationale for using thymine instead of uracil in DNA: cytosine spontaneously deaminates to uracil, creating mutagenic U:G mismatches that require complex repair machinery (such as uracil-DNA glycosylase and dUTPases). Using thymine (5-methyluracil) provides a distinct chemical marker that allows cellular repair systems to recognize and fix deaminated cytosines, representing a well-established evolutionary selection pressure.
Shin-Ichiro Yonekura, Nobuya Nakamura, Shuji Yonei, Qiu-Mei Zhang-Akiyama. Generation, biological consequences and repair mechanisms of cytosine deamination in DNA.. 2009. https://doi.org/10.1269/jrr.08080
Discusses how uracil in DNA arises spontaneously from cytosine deamination and is treated as a mutagenic lesion that requires active repair.
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Béata G Vértessy, Judit Tóth. Keeping uracil out of DNA: physiological role, structure and catalytic mechanism of dUTPases.. 2009. https://doi.org/10.1021/ar800114w
Explains that the thymine-uracil exchange is a major chemical difference between DNA and RNA, where uracil incorporation is generally a mistake that needs to be excised.
Vytaute Starkuviene, Hans-Joachim Fritz. A novel type of uracil-DNA glycosylase mediating repair of hydrolytic DNA damage in the extremely thermophilic eubacterium Thermus thermophilus.. 2002. https://doi.org/10.1093/nar/30.10.2097
Highlights that spontaneous hydrolytic deamination of cytosine creates a major mutational pressure that drove the evolution of dedicated DNA repair pathways targeting uracil.
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