Purifying selection and selective sweep leave distinct genomic signatures distinguishable by summary statistics.
Is it true that purifying selection and selective sweep leave distinct genomic signatures distinguishable by summary statistics?
Yes. Purifying selection and selective sweeps leave distinct genomic signatures that can be detected and distinguished using various summary statistics and computational methods.
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The retrieved papers consistently demonstrate that different forms of selection, such as purifying selection and selective sweeps, leave distinct genomic footprints (such as reduced variation, altered site frequency spectra, and specific linkage disequilibrium patterns) that can be identified and distinguished using summary statistics, machine learning, and specialized statistical tools.
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Alachiotis, N. & Pavlidis, P. (2018). RAiSD detects positive selection based on multiple signatures of a selective sweep and SNP vectors. doi.org. https://doi.org/10.1038/s42003-018-0085-8
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Pavlidis, P. & Alachiotis, N. S. (2017). A survey of methods and tools to detect recent and strong positive selection. doi.org. https://doi.org/10.1186/s40709-017-0064-0
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Xue, A. T., Schrider, D. R., & Kern, A. (2019). Discovery of Ongoing Selective Sweeps within Anopheles Mosquito Populations Using Deep Learning. doi.org. https://doi.org/10.1093/molbev/msaa259
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Kumar, H., Panigrahi, M., Panwar, A., Rajawat, D., Nayak, S. S., Saravanan, K., Kaisa, K., Parida, S., Bhushan, B., & Dutt, T. (2022). Machine-Learning Prospects for Detecting Selection Signatures Using Population Genomics Data. doi.org. https://doi.org/10.1089/cmb.2021.0447
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Schneider, K., White, T. J., Mitchell, S., Adams, C. E., Reeve, R., & Elmer, K. R. (2020). The pitfalls and virtues of population genetic summary statistics: Detecting selective sweeps in recent divergences. doi.org. https://doi.org/10.1111/jeb.13738
What does the evidence say?
The retrieved papers consistently demonstrate that different forms of selection, such as purifying selection and selective sweeps, leave distinct genomic footprints (such as reduced variation, altered site frequency spectra, and specific linkage disequilibrium patterns) that can be identified and distinguished using summary statistics, machine learning, and specialized statistical tools.
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