Specific molecular ions spontaneously dissociate through two different fragmentation pathways
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Peer-reviewed studies on gas-phase reactions and alkane radical cations show that specific molecular ions dissociate through competing pathways, such as bond cleavage versus dissociative rearrangement.
Accurate structural identification of lipids in mass spectrometry is essential for advancing lipidomics and achieving a holistic understanding of complex cellular systems. Gas-phase charge inversion ion/ion reactions, which allow for alteration of the ion type before dissociation, have been shown to improve lipid identification. The products observed from these reactions arise from competing and consecutive pathways, but limited studies have been performed to characterize the mechanisms of these interactions. Specifically, we have used a charge inversion ion/ion reaction between 1,4-phenylenedipropionic acid (PDPA) and phosphatidylcholines (PCs) to provide structural information on fatty acyl <i>sn</i>-positions and enable separation of isobaric and isomeric lipids. Upon reaction with PDPA, [PC + H]<sup>+</sup>, [PC + Na]<sup>+</sup>, and [PC + K]<sup>+</sup> analyte ion types each demonstrate differences in partitioning between two major product ion channels: successful lipid charge inversion resulting in a demethylated lipid anion, which can then be subjected to collision induced dissociation (CID) to reveal fatty acyl <i>sn</i>-positions, and single-particle transfer from PC to PDPA resulting in a neutral lipid and charge reduced PDPA, which provides no information on the lipid structure. In this work, density functional theory (DFT) calculations were performed to characterize relevant potential energy barriers for the competing processes, which enables insights into the factors that affect the relative product ion partitioning. These calculations provided detailed insights into the structural dynamics and potential energy barriers associated with proton transfer, methyl group migration, and other competing interactions. Our results revealed that specific transition states differ significantly depending on the ion type and reaction environment, suggesting that the energetic landscape of these processes is influenced by both the size and the coordination state of
These two reaction pathways have been thought to proceed for all three lipid ion types through the same general mechanism, though at significantly different relative efficiencies. 33 The relative heights of energy barriers likely play major roles in determining the relative abundance of these competing reactions and the efficiency of successful charge inversion. 39 Herein, we perform calculations and experiments using relatively small model systems to study the relevant potential energy surfaces associated with PC/PDPA ion/ion reactions to gain insights into factors that affect the relative partitioning between the charge inversion reaction and particle transfer.
Based on the isotopic composition of deuterated PC/PDPA reaction product ions ( Figure 3 ), we propose that the PC/PDPA charge inversion ion/ion reaction mechanism of protonated PCs involves complex formation and multiple competing proton transfer pathways ( Scheme 2 ). Previously proposed PC/PDPA reactions mechanisms have emphasized the role of proton transfer in product ion partitioning, but did not specify the exact source of transfer from the PC. 30 , 31 , 33 , 38 Here, proposed mechanisms for ion/ion reactions between a protonated PC and PDPA, detailing specific proton transfer sites, are illustrated in Scheme 2 .
Additionally, given the distinct chemical properties of protons, including their capacity for direct proton transfer and the formation of specific hydrogen bonding interactions, as opposed to the ionic and less reactive nature of metal ions (i.e., sodium and potassium), we propose that the mechanisms of protonated PC/PDPA reactions follow different pathways than those observed for sodiated or potassiated PC/PDPA reactions. Both the reaction mechanisms and energy barriers were examined by using DFT calculations and will be discussed in the following sections. Barrier Estimates for Ion/ion Reactions with [PC + H] + .
These results suggest that the cationized PC headgroup is capable of facilitating charge inversion via a two-particle transfer (i.e., the metal and a proton) process that results in neutral trimethylamine loss, revealing an alternative competitive mechanism. The presence of the [PC – N(CH 3 ) 3 ] − ion across both reactions highlights the influence of metal ions in modulating fragmentation patterns in charge inversion reactions, providing insights into the selectivity and reactivity of these cationized PC ion types. Additionally, the ion at m / z 719.5 may reflect a unique metal-mediated process.
While the exact identity remains unclear, its appearance suggests a possible new fragmentation or charge inversion pathway influenced by metal coordination. Further investigation is needed to clarify the origin and mechanism of this ion. Figure 5. Open in a new tab
E product (kcal mol −1 ) [PC + H] + 23.6/10.6 54.1 / 9.4 * [PC + Na] + 9.8 * 55.0 37.6 8.6 * [PC + K] + 14.1 * 55.7 36.3 10.5 * Open in a new tab a Asterisks denote the BSSE-corrected energy level of the particle transfer product ions at equilibrium. Based on experimental and calculation data, the right pathway leading to charge inversion reaction for the sodiated and potassiated reactant complexes may go over multiple competing transition state ( Scheme 3 , Structures 3 and 6) barriers to form different product complexes ( Scheme 3 , Structures 4 and 7) in which the cation is still electrostatically bound to both reactant ions.
Despite similar charge inversion barrier heights across ion types, the lower particle transfer barriers for metal ions likely drive the reduced charge inversion efficiency, suggesting that the choice of cation significantly impacts the energy requirements for key reaction steps. Third, sodiated and potassiated reactions involve additional energy barriers for competing charge inversion pathways (i.e., TS CI ② barriers), which likely reduce the overall efficiency of ion/ion reactions by limiting the formation of charge inversion products through pathway ②.
Ionization of alkanes to form radical cations activates their otherwise unreactive C-H bonds, facilitating important chemical processes such as hydrocarbon cracking. This work investigates the radical cation dissociation dynamics of hexane (C<sub>6</sub>H<sub>14</sub>) structural isomers by using femtosecond time-resolved mass spectrometry and quantum chemical calculations. All five isomers exhibit competition between the yields of fragment ions arising from direct C-C bond cleavage or dissociative rearrangement with hydrogen migration on dynamical time scales of ∼50-300 fs, suggesting that hydrogen migration in the metastable cations operates on such short time scales. Additional isomer- and conformer-specific dynamics are observed. Preferential dissociation pathways in the branched isomers are found to arise from geometric relaxation to cation structures with one elongated C-C bond. Coherent vibrational excitation along this elongated C-C bond in 3-methylpentane and 2,3-dimethylbutane results in ion yield oscillations in the first ∼300-400 fs after ionization. Enhanced depletion of the molecular ion signal in <i>n</i>-hexane compared to that in the branched isomers is attributed to a strongly coupled excited state in the most populated conformer that can be accessed by a two-photon transition. Collectively, these results provide a foundational understanding of dissociation dynamics in alkane radical cations and how these dynamics are affected by specific isomer and conformer structures.
All five isomers exhibit competition between the yields of fragment ions arising from direct C–C bond cleavage or dissociative rearrangement with hydrogen migration on dynamical time scales of ∼50–300 fs, suggesting that hydrogen migration in the metastable cations operates on such short time scales. Additional isomer- and conformer-specific dynamics are observed. Preferential dissociation pathways in the branched isomers are found to arise from geometric relaxation to cation structures with one elongated C–C bond.
Coherent vibrational excitation along this elongated C–C bond in 3-methylpentane and 2,3-dimethylbutane results in ion yield oscillations in the first ∼300–400 fs after ionization. Enhanced depletion of the molecular ion signal in n -hexane compared to that in the branched isomers is attributed to a strongly coupled excited state in the most populated conformer that can be accessed by a two-photon transition. Collectively, these results provide a foundational understanding of dissociation dynamics in alkane radical cations and how these dynamics are
Previous studies on multiple classes of polyatomic molecules have shown that the presence of electronic excited states in the cation, with energies lower than the ionizing laser photon, tends to result in extensive fragmentation during SFI, while the absence of low-lying and strongly coupled excited states enhances the yield of intact molecular ions.
In contrast, the dominant n -hexane conformer 1 (90% at the D 0 geometry) has extremely strong coupling ( f = 0.28) to an excited state 2.6 eV above the ground state, which could be reached by two-photon excitation with a 1.74 eV probe pulse. Because the relatively high intensity of the probe pulse (∼10 13 W cm –2 ) is expected to enable two-photon excitation, enhanced n -hexane fragmentation compared to the branched isomers may be expected at long pump–probe delays. Figure shows the transient C 6 H 14 + molecular ion signals for each isomer.
In 3-methylpentane, the oscillations of the molecular ion (dark red) and C 4 H 8 + (yellow) can be seen to be roughly in-phase with each other and roughly out of phase with the C 4 H 9 + signal (dark orange). Similarly, the oscillations in the molecular ion (dark red) and C 3 H 6 + (green) signals from 2,3-dimethylbutane are roughly in phase with each other and out of phase with the C 3 H 7 + (yellow-green) signal. The antiphase oscillations between pairs of fragment ions indicate that the dissociation pathways leading to fragmentation of 3-methylpentane into C 4 H 8 + or C 4 H 9 + and fragmentation of 2,3-dimethylbutane into C 3 H 6 + and C 3 H 7 + are in direct competition.
,, Specifically, this result suggests that absorption of a photon from the probe pulse at a specific point along the potential energy surface can cause metastable 3-methylpentane ions that would spontaneously form C 4 H 8 + to instead produce C 4 H 9 + . Similarly, metastable 2,3-dimethylbutane ions that would spontaneously form C 3 H 6 + instead produce C 3 H 7 + . This competition between formation of C 4 H 8 + or C 3 H 6 + , which involve hydrogen migration, and the direct C–C cleavage products C 4 H 9 + or C 3 H 7 + suggests that electronic excitation of metastable C 6 H 14 + cations can selectively suppress spontaneous dissociation pathways involving migration of one hydrogen atom.
Overall, the competition between C 2 H 5 + and C 2 H 3 + in n -hexane and 3-methylpentane at short pump–probe delays resembles the competition among C 3 H 5 + and C 3 H 3 + fragments seen in Figure b, suggesting similar short time scales for dissociation pathways to C 2 H 3 + involving the loss of two hydrogen atoms. To quantify the dynamical time scales seen in Figures through , all transient ion signals were fit to exponential decay functions convoluted with the Gaussian instrument response function, following the literature method.
The longer T 2 time constant could be associated with an initial or sequential bond cleavage step. However, we note that further computational work, including molecular dynamics simulations, would be needed to support the assignment of any experimental time constant to a specific reaction process. Even without such computations, visualization of the complex ion yield dynamics from the large numbers of fragments observed in the hexane isomers can be aided by calculating the Pearson correlation coefficient for each pair of ions over a specific range of pump–probe delays.
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