Bacteriophages and certain bacteria can infect other bacteria
the verdict
INSUFFICIENT LEANING
refutedsupported
the weight of evidence
15 sources for · 0 against
The retrieved evidence extensively documents that bacteriophages are viruses that infect and replicate within bacteria, satisfying the first atom of the claim, but provides only minimal or tangential mentions regarding certain bacteria interacting with or inhibiting other bacteria.
Recently, a small-molecule communication mechanism was discovered in a range of Bacillus -infecting bacteriophages, which these temperate phages use to inform their lysis-lysogeny decision. We present a mathematical model of the ecological and evolutionary dynamics of such viral communication and show that a communication strategy in which phages use the lytic cycle early in an outbreak (when susceptible host cells are abundant) but switch to the lysogenic cycle later (when susceptible cells become scarce) is favoured over a bet-hedging strategy in which cells are lysogenised with constant probability. However, such phage communication can evolve only if phage-bacteria populations are regularly perturbed away from their equilibrium state, so that acute outbreaks of phage infections in pools of susceptible cells continue to occur. Our model then predicts the selection of phages that switch infection strategy when half of the available susceptible cells have been infected.
Our model then predicts the selection of phages that switch infection strategy when half of the available susceptible cells have been infected. Research organism: Other eLife digest Bacteriophages, or phages for short, are viruses that need to infect bacteria to multiply. Once inside a cell, phages follow one of two strategies. They either start to replicate quickly, killing the host in the process; or they lay dormant, their genetic material slowly duplicating as the bacterium divides. These two strategies are respectively known as a ‘lytic’ or a ‘lysogenic’ infection.
In 2017, scientists discovered that, during infection, some phages produce a signalling molecule that influences the strategy other phages will use. Generally, a high concentration of the signal triggers lysogenic infection, while a low level prompts the lytic type. However, it is still unclear what advantages this communication system brings to the viruses, and how it has evolved. Here, Doekes et al. used a mathematical model to explore how communication changes as phages infect a population of bacteria, rigorously testing earlier theories.
status released display-pdf yes is-olf no is-manuscript no is-preprint no is-journal-matter no is-scanned no is-retracted no Received 2020 Apr 29; Accepted 2021 Jan 15; Collection date 2021. Introduction For several decades now, it has been recognised that communication between individuals is not limited to multicellular organisms, but is also common among microbes. The best-known example of microbial communication is bacterial quorum sensing , a process in which bacteria secrete signalling molecules to infer the local cell density and consequently coordinate the expression of certain genes ( Nealson et al., 1970 ; Miller and Bassler, 2001 ).
We study under what conditions communication between phages evolves and predict which communication strategies are then selected. Bacteriophages of the SPbeta group, a genus in the order of Caudovirales of viruses that infect Bacillus bacteria, encode a small signalling peptide, named ‘arbitrium’, which is secreted when the phages infect bacteria ( Erez et al., 2017 ).
This happens because phage exploitation leads to a low susceptible cell density, and hence a virulent strategy in which phages rapidly lyse their host cell to release new phage particles that can then infect other cells no longer pays off (because few cells are
We however find that communication evolves under certain conditions only, namely if the phages regularly cause new outbreaks in substantial pools of susceptible host cells. Moreover, when communication evolves under such conditions, we predict that a communication strategy is selected in which phages use arbitrium to switch from a fully lytic to a fully lysogenic strategy when approximately half of all susceptible cells have been infected. Finally, we investigate how reliable the arbitrium signal needs to be for such communication to evolve, and show that the results are remarkably robust against variation in the density of bacteria. Materials and methods Model Following earlier models (e.g.
( A ) Free phages infect susceptible bacteria, at which point a fixed amount of arbitrium is produced. This arbitrium is taken up and degraded by susceptible cells and lysogens. Upon infection, a cell enters the lysogenic cycle with propensity φ ( A ) , or the lytic cycle with propensity ( 1 - φ ( A ) ) ; the lysogeny propensity φ ( A ) depends on the current arbitrium concentration. The lytic cycle leads to immediate lysis of the host cell and release of a burst of new virions. In the lysogenic cycle, the phage remains dormant in the lysogen population, which grows logistically with the same rate as the susceptible cell population.
One major factor that can ensure a regular exposure to susceptible cells (the first requirement) is spatial structure. If phages mostly infect bacteria that are physically close to them, a global susceptible population can be maintained even though susceptible bacteria may be depleted in local environments ( Kerr et al., 2006 ). Indeed, spatial structure has been shown to greatly influence phage evolution, for instance by promoting the selection of less virulent strains that deplete their local host populations more slowly ( Kerr et al., 2006 ; Heilmann et al., 2010 ; Berngruber et al., 2015 ).
E i ( τ i | τ r ) can be interpreted as a kind of ‘exchange rate’, expressing the value of a single phage at time τ i in the currency of lysogens. This suggests another way of phrasing the results above, where we compared two phage variants of which phage 2 switched slightly later than phage 1: During the time interval from τ i , 1 to τ i , 2 = τ i , 1 + d τ , both competing invading phage variants infect b a S ( τ i , 1 ) P i ( τ i , 1 | τ i , 1 , τ r ) d τ susceptible bacteria per volume. Phage 1 directly converts these infected bacteria into lysogens. Phage 2 instead converts each of them into B additional phages.
Fire blight, caused by the bacterium Erwinia amylovora , is a major threat to pear production worldwide. Bacteriophages, viruses that infect bacteria, are a promising alternative to antibiotics for controlling fire blight. In this study, we isolated a novel bacteriophage, RH-42-1, from Xinjiang, China. We characterized its biological properties, including host range, plaque morphology, infection dynamics, stability, and sensitivity to various chemicals. RH-42-1 infected several E. amylovora strains but not all. It produced clear, uniform plaques and exhibited optimal infectivity at a multiplicity of infection (MOI) of 1, reaching a high titer of 9.6 × 10 9 plaque-forming units (PFU)/mL. The bacteriophage had a short latent period (10 min), a burst size of 207 PFU/cell, and followed a sigmoidal one-step growth curve. It was stable at temperatures up to 60 °C but declined rapidly at higher temperatures. RH-42-1 remained viable within a pH range of 5 to 9 and was sensitive to extreme pH values. The bacteriophage demonstrates sustained activity upon exposure to ultraviolet radiation for 60 min, albeit with a marginal reduction. In our assays, it exhibited a certain level of resistance to 5% chloroform (CHCl 3 ), 5% isopropanol (C 3 H 8 O), and 3% hydrogen peroxide (H 2 O 2 ), which had little effect on its activity, whereas it showed sensitivity to 75% ethanol (C 2 H 5 OH). Electron microscopy revealed that RH-42-1 has a tadpole-shaped morphology. Its genome size is 14,942 bp wit
2024 https://creativecommons.org/licenses/by/4.0/ Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( https://creativecommons.org/licenses/by/4.0/ ). Fire blight, caused by the bacterium Erwinia amylovora , is a major threat to pear production worldwide. Bacteriophages, viruses that infect bacteria, are a promising alternative to antibiotics for controlling fire blight. In this study, we isolated a novel bacteriophage, RH-42-1, from Xinjiang, China.
Biological control agents, such as the fluorescent pseudomonad “Blight Ban A506” [ 6 ], the broad-spectrum Pantoea sp. formulation “Blight BanC9-1” [ 7 ], the Bacillus subtilis QST713 formulation “Serenade” [ 8 ], and BD170 [ 9 ] have been applied on a certain scale, showing comparable efficacy to antibiotics under ideal conditions. In China, a group of antagonistic strains exhibiting good activity against fire blight bacteria has been screened, but they are still in the research or trial phase and have not been registered for use [ 10 ]. Lytic bacteriophages are a class of viruses that lyse and kill target bacteria.
They show promising applications in the safe and effective control of pathogenic bacteria in both plants and animals, addressing issues related to bacterial resistance and rapid detection [ 27 ]. Therefore, the identification of bacteriophages with strong lytic activity against target pathogenic bacteria and high stability is crucial for the development of bacteriophage-based biocontrol agents. The key to isolating virulent bacteriophages lies in the collection, enrichment, and purification of environmental samples containing bacteriophages. In this study, using E.
This finding aligns with the results of the current study. Compared with phage isolation from the soil of an Xanthomonas -infected rice paddy, the current study had a lower probability of isolating virulent bacteriophages against fire blight bacteria [ 30 ]. This difference might be attributed to the use of a mixture of five strains of fire blight bacteria as the target host in this study. Due to the strong specificity of bacteriophages, the selection for infection of different strains within the fire blight bacteria might have led to the failure of some bacteriophages with strong specificity that could not infect the mixed host strains to be isolated.
This result suggests that, when isolating lytic bacteriophages, it is advisable to mix multiple strains from different sources as target host bacteria, which can increase the success rate of isolation. A bacteriophage’s host range is closely related to the source of its isolation material. Balogh et al. [ 31 ] isolated bacteriophages against X. axonopodis pv. citri from citrus canker lesions and found that the host range was narrow. In contrast, bacteriophages isolated from soil and sewage had a broader host range.
[ 34 ] isolated the fire blight bacteriophage pEp_SNUABM_08, which has a latent period of 40 min and a burst size of 20 phages. Akremi et al. [ 14 ] isolated the fire blight bacteriophage PEar 6, which has a latent period of 20 min, a rising burst period of 25 min, and a burst size of about 280 PFU/cell. Compared with the above fire blight bacteriophages, PEar 6 belongs to a bacteriophage category with short latent periods and long burst times. This indicates that this bacteriophage has strong replication activity and can invade and lyse the host bacteria in a short
Additionally, nine proteins encoded by RH-42-1 displayed amino acid sequence variations compared to their PRD1 counterparts. Additionally, differences exist between them in certain characteristics. Bamford et al. [ 44 ] reported that PRD1 bacteriophages isolated from sewage are sensitive to chloroform, whereas RH-42-1 bacteriophages isolated in this study from soil exhibit tolerance to chloroform.
PRD1 bacteriophages infect host bacteria of the pseudomonads and Enterobacteriaceae families containing P or W incompatible plasmids and rely on host plasmids for replication [ 45 ]; whereas, RH-42-1 infects host bacteria of the fire blight bacterium which commonly contain the PEA29 plasmid, and some strains contain plasmids such as PEA68, PEA34, PEA72, and PEA8.7 [ 46 ]. However, whether RH-42-1 relies on host bacterial plasmids for replication and whether the host bacteria contain incompatible group plasmids require further investigation and confirmation.
Bacteriophages are viral parasites of bacteria. A successful infection starts with the adsorption of the bacteriophage to a specific receptor on the host cell surface. Most bacteriophages are thought to have a narrow host range but this can be extended in certain cases. One strategy forextending host range is to first express a known functional bacteriophage receptor protein in bacteria previously non-susceptible to the bacteriophage, thereby enabling adsorption and potential infection by viruses that target the specific receptor. To investigate the feasibility of this approach, a plasmid (pMUT13) encoding the Escherichia coli LamB porin, the receptor for bacteriophage Lambda, was transferred into three different enterobacterial genera, namely Citrobacter, Yersinia, and Serratia. Over 100 environmental bacteriophages were isolated that infected these pMUT13-containing strains, and some bacteriophages were shown to infect their respective hosts in a LamB-dependent way. The host ranges of the environmental bacteriophages were cross-tested across the heterologous genera and surface adsorption kinetics investigated. Unlike bacteriophage Lambda, which is a member of the Siphoviridae, these newly-isolated LamB-dependent bacteriophages were more commonly members of the Myoviridae, based on transmission electron microscopy and whole genome sequences. Furthermore, an interesting selection of evolved bacteriophage mutants with broader host range were isolated, and the key mutations inv
in microbial mats at the surface, and up to 70% of marine bacteria may be infected by bacteriophages. Bacteriophages were used from the 1920s as an alternative
A bacteriophage (), also known informally as a phage (), is a virus that infects and replicates within bacteria. The term is derived from Ancient Greek φαγεῖν (phagein) 'to devour' and bacteria. Bacteriophages are composed of proteins that encapsulate a DNA or RNA genome, and may have structures that are either simple or elaborate. Their genomes may encode as few as four genes (e.g. MS2) and as
Bacterial cells are protected by a cell wall of polysaccharides, which are important virulence factors protecting bacterial cells against both immune host defenses and antibiotics. To enter a host cell, bacteriophages bind to specific receptors on the surface of bacteria, including lipopolysaccharides, teichoic acids, proteins, or even flagella. This specificity means a bacteriophage can infect only certain bacteria bearing receptors to which they can bind, which in turn, determines the phage's host range. Polysaccharide-degrading enzymes are virion-associated proteins that enzymatically degrade the capsular outer layer of their hosts at the initial step of a tightly programmed phage infection process.
Host growth conditions also influence the ability of the phage to attach and invade them. As phage virions do not move independently, they must rely on random encounters with the correct receptors when in solution, such as blood, lymphatic circulation, irrigation, soil water, etc.
Myovirus bacteriophages use a hypodermic syringe-like motion to inject their genetic material into the cell. After contacting the appropriate receptor, the tail fibers flex to bring the base plate closer to the surface of the cell. This is known as reversible binding. Once attached completely, irreversible binding is initiated and the tail contracts, possibly with the help of ATP present in the tail, injecting genetic material through the bacterial membrane. The injection is accomplished through a sort of bending motion in the shaft by going to the side, contracting closer to the cell and pushing back up. Podoviruses lack an elongated tail sheath like that of a myovirus, so instead, they use their small, tooth-like tail fibers enzymatically to degrade a portion of the cell membrane before inserting their genetic material.
Bacteria in nature can exist in multicellular communities called biofilms. Biofilms also form in the course of many infections. Pseudomonas aeruginosa infections frequently involve biofilms, which contribute materially to the difficulty to treat these infections with antibiotic therapy. Many biofilm-related characteristics are controlled by the second messenger, cyclic-di-GMP, which is upregulated on surface contact. Among these factors is the exopolysaccharide Psl, which is a critically important component of the biofilm matrix. Here, we describe the discovery of a P. aeruginosa bacteriophage, which we have called Clew-1, that directly binds to and uses Psl as a receptor. While this phage does not efficiently infect planktonically growing bacteria, it can disrupt P. aeruginosa biofilms and replicate in biofilm bacteria. We further demonstrate that the Clew-1 can reduce the bacterial burden in a mouse model of P. aeruginosa keratitis, which is characterized by the formation of a biofilm on the cornea. Due to its reliance on Psl for infection, Clew-1 does not actually form plaques on wild-type bacteria under standard in vitro conditions. This argues that our standard isolation proce
The BacterioPHAGE for Gastrointestinal Health-2 study is designed to determine if a commercial bacteriophage product can increase the survival and efficacy of probiotic bacteria that will be concurrently administered. Bacteriophages may act as prebiotics, which are traditionally defined as indigestible dietary components that selectively enhance specific bacterial species in the intestines to confer a health benefit. In this study, the "prebiotic" is a unique combination of bacteriophages, or viruses that infect bacteria. These phages are generally regarded as safe for human consumption and ar
Summary Bacteriophages are one of the most abundant entities on the planet and are present in high concentrations within humans and animals, mostly in the gut. Phages that infect intestinal bacteria are released by defecation and remain free in extra‐intestinal environments, where they usually persist for longer than their bacterial hosts. Recent studies indicate that a large amount of the genetic information in bacterial genomes and in natural environments is of phage origin. In addition, metagenomic analysis reveals that a substantial number of bacterial genes are present in viral DNA in different environments. These facts support the belief that phages can play a significant role in horizontal gene transfer between bacteria. Bacteriophages are known to transfer genes by generalized and specialized transduction and indeed there are some examples of phages found in the environment carrying and transducing genes of bacterial origin. A successful transduction in the environment requires certain conditions, e.g. phage and bacterial numbers need to exceed certain threshold concentrations, the bacteria need to exist in an infection‐competent physiological state, and lastly, the physical conditions in the environment (pH, temperature, etc. of the supporting matrix) have to be suitable for phage infection. All three factors are reviewed here, and the available information suggests: (i) that the number of intestinal bacteria and phages in faecally contaminated environments guarantee
Antibiotics are powerful medicines that fight certain infections and can save lives when used properly. However, with bacteria becoming more resistant to antibiotics, new methods to treat bacterial infections are needed. One promising method for treating bacteria is the use of bacteriophages: viruses that infect and kill bacteria. This experiment investigated the effect of phage-antibiotic synergism on Klebsiella pneumoniae, Hafnia alvei, and transductant ampicillin-resistant Hafnia alvei. The trait for ampicillin resistance was transferred from K. pneumoniae to H. alvei using a device that was constructed in the lab. The zones of inhibition were then measured around the bacteria that were treated with the antibiotic discs alone and the bacteria that were treated with both the bacteriophage and the antibiotic discs. Hafnia alvei, Klebsiella pneumoniae, and the transductant ampicillin-resistant Hafnia alvei colonies exhibited larger zones of inhibition when the antibiotics were used in conjunction with the bacteriophages compared to when the antibiotics were used alone. The bacteriophages also made the transductant ampicillin-resistant Hafnia alvei colonies slightly susceptible to ampicillin again. This project demonstrates STEM integration into a high school biological science project.
Lactococcus lactis is a lactic acid bacterium widely used as a starter culture in the manufacture of dairy products, especially a wide variety of cheeses. Improved industrial strains would help to manufacture better food products that can meet the industry’s and consumer’s demands with respect to e.g. quality, taste, texture and shelf life. Bacteriophage infection of L. lactis starter cultures represents one of the main causes of fermentation failure and consequent economic losses for the dairy industry. In this study, however, we aim at employing bacteriophages for beneficial purposes. We dev
Bacteriophages are the only viruses where this phenomenon is called lytic and lysogenic cycle. There is a similiar phenomenon in humans (and other mammals as well) which is called "endogenous retrovirus" and is pretty common. For humans, there are estimations that something between 5 and 8% of the human genome are made of endogeneous retroviruses. See these two references: Long-term reinfection of the human genome by endogenous retroviruses. Endogenous Retroviruses and Human Evolution Otherwise I can recommend reading the article on " Endogeneous retroviruses " in the Wikipedia, it is pretty extensive and has a lot of references.
I'm not so sure about my answer. But I think "bacteriophage" is a polyphyletic name of which was defined by the ability of infecting bacteria, but not defined by the genetic, evolutionary, or morphological relationships. It seems that if a species (or a taxon in a higher taxonomic level) of virus is infectious to bacteria, it will be classified as a member of the bacteriophage. Here is a review article about the phage classification.
This study addresses the increasingly severe global public health challenge of antibiotic resistance, focusing on exploring phage therapy as a potential treatment strategy for multidrug-resistant bacterial skin infections. Bacteriophages, with advantages such as high specificity, low propensity for inducing resistance, and minimal side effects, have shown promise in preliminary clinical research for scenarios like chronic wound infections, demonstrating potential in reducing bacterial load and promoting healing. To this end, the study is designed as a prospective, double-blind, non-inferiority
observation that certain bacteria (actinomycetes) stopped the growth of other bacteria. In 1928 Fleming … feldspar, and certain marbles), which allow the sun’s rays to penetrate so these bacteria can carry out … growth. (1) Most bacteria can grow over a 30°C temperature range. (2) Bacteria can be classi- fied according
observation that certain bacteria (actinomycetes) stopped the growth of other bacteria. Lieske made … (1) Most bacteria can grow over a 30°C temperature range. (2) Bacteria can be classified … Thiobacillus, which oxides sulfur, and certain other bacteria that reduce sulfur. Sulfur bacteria
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